OpenAlex
doi.org
Nov 15, 2016
arXiv
arxiv.org
Feb 4, 2016
Primer on the Gene Ontology
The Gene Ontology (GO) project is the largest resource for cataloguing gene function. The combination of solid conceptual underpinnings and a practical set of features have made the GO a widely adopted resource in the research community and an essential resource for data analysis. In this chapter, we provide a concise …
Europe PMC
doi.org
Mar 16, 2026
CRISPR Gene Editing for Nucleotide Repeat Expansion Disorders: A Systematic Review of Preclinical and Clinical Evidence.
DOAJ
mdpi.com
Sep 1, 2022
A New Strategy for Efficient Screening and Identification of Monoclonal Antibodies against Oncogenic Avian Herpesvirus Utilizing CRISPR/Cas9-Based Gene-Editing Technology
Marek’s disease virus (MDV) is an important oncogenic α-herpesvirus that induces Marek’s disease (MD), characterized by severe immunosuppression and rapid-onset T-cell lymphomas in its natural chicken hosts. Historically, MD is regarded as an ideal biomedical model for studying virally induced cancers. Monoclonal antib…
CORE
core.ac.uk
Jul 23, 2018
Research progress of gene editing technology CRISPR/Cas9 system in animal gene editing
Gene editing technology, from the beginning of RNA interference (RNAi) technology to efficient developed enzyme technology, has been widely used in recent years. These efficient enzyme technologies include zinc finger nuclease (ZFN) technology, transcriptional activation-like effector nuclease (TALENs) technology, and …
OpenAIRE
doi.org
Feb 19, 2021
Comparative Study Between the CRISPR/Cpf1 and CRISPR/Cas9 systems for Multiplex Gene Editing in Maize
Abstract Background: The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) system has been successfully used for multiplex gene editing in crops. Although CRISPR/Cas9 system has been proved to be an efficient multiplex gene editing system in crops, it was still u…
NASA ADS
doi.org
Nov 1, 2022
Unintended Genomic Outcomes in Current and Next Generation GM Techniques: A Systematic Review
Classical genetic engineering and new genome editing techniques, especially the CRISPR/Cas technology, increase the possibilities for modifying the genetic material in organisms. These technologies have the potential to provide novel agricultural traits, including modified microorganisms and environmental applications.…
OpenAlex
doi.org
Aug 23, 2018
Cas9 immunity creates challenges for CRISPR gene editing therapies
Clustered regularly interspaced short palindromic repeats (CRISPR)-Cas9 is a genome-editing technology1,2 that utilizes archaeal and bacterial Cas9 nucleases to introduce double-stranded breaks in DNA at targeted sites. These breaks can be used to remove, replace, or add pieces of DNA. While not the first genome editor…
arXiv
arxiv.org
Feb 4, 2016
Gene Ontology: Pitfalls, Biases, Remedies
The Gene Ontology (GO) is a formidable resource but there are several considerations about it that are essential to understand the data and interpret it correctly. The GO is sufficiently simple that it can be used without deep understanding of its structure or how it is developed, which is both a strength and a weaknes…
Europe PMC
doi.org
Mar 4, 2026
CRISPR gene editing of angiopoietin-like 3: toward one-time precision therapy for dyslipidaemia.
DOAJ
doi.org
Mar 1, 2024
Developments and future prospects of personalized medicine in head and neck squamous cell carcinoma diagnoses and treatments
Abstract Background Precision healthcare has entered a new era because of the developments in personalized medicine, especially in the diagnosis and treatment of head and neck squamous cell carcinoma (HNSCC). This paper explores the dynamic landscape of personalized medicine as applied to HNSCC, encompassing both curre…
CORE
core.ac.uk
Jan 14, 2019
Anti-CRISPR-mediated control of gene editing and synthetic circuits in eukaryotic cells.
Repurposed CRISPR-Cas molecules provide a useful tool set for broad applications of genomic editing and regulation of gene expression in prokaryotes and eukaryotes. Recent discovery of phage-derived proteins, anti-CRISPRs, which serve to abrogate natural CRISPR anti-phage activity, potentially expands the ability to bu…
OpenAIRE
doi.org
Mar 1, 2015
CRISPR/Cas: A Faster and More Efficient Gene Editing System
Gene editing technology has been at its mature stage with the successful development of TALENs and CRISPR/Cas enzymes. The genetically modified endonucleases of ZFNs, TALENs, and CRISPR/Cas are widely used in the development of genetically modified cells or organisms. Among the enzymes that possess gene editing ability…
NASA ADS
doi.org
Jan 1, 2024
Molecular Basis and Engineering Strategies for Transcription Factor-Mediated Reproductive-Stage Heat Tolerance in Crop Plants
Heat stress (HS) is a major threat to crop productivity and is expected to be more frequent and severe due to climate change challenges. The predicted increase in global temperature requires us to understand the dimensions of HS experienced by plants, particularly during reproductive stages, as crop productivity is maj…
OpenAlex
doi.org
Apr 1, 2020
Selective organ targeting (SORT) nanoparticles for tissue-specific mRNA delivery and CRISPR–Cas gene editing
arXiv
arxiv.org
Apr 27, 2024
CRISPR-GPT for Agentic Automation of Gene-editing Experiments
The introduction of genome engineering technology has transformed biomedical research, making it possible to make precise changes to genetic information. However, creating an efficient gene-editing system requires a deep understanding of CRISPR technology, and the complex experimental systems under investigation. While…
Europe PMC
doi.org
Dec 20, 2025
The potential and innovative applications of CRISPR gene editing technology in enzyme gene development.
DOAJ
ieeexplore.ieee.org
Apr 22, 2026
Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy
The CRISPR/Cas9 system is a creative and innovative gene editing biotechnology tool in genetic engineering. Although several achievements have been attained using the CRISPR/Cas9 system, it is still a challenge to avoid off-target effects and improve the editing efficacy. Previous efforts on evaluating the efficacy and…
CORE
core.ac.uk
Apr 19, 2017
Generation of heritable germline mutations in the jewel wasp Nasonia vitripennis using CRISPR/Cas9.
The revolutionary RNA-guided endonuclease CRISPR/Cas9 system has proven to be a powerful tool for gene editing in a plethora of organisms. Here, utilizing this system we developed an efficient protocol for the generation of heritable germline mutations in the parasitoid jewel wasp, Nasonia vitripennis, a rising insect …
OpenAIRE
doi.org
Jan 1, 2025
Current progress in CRISPR-Cas systems for rare diseases
The groundbreaking CRISPR-Cas gene editing method permits exact genetic code alteration. The "CRISPR" DNA protects bacteria from viruses. CRISPR-Cas utilizes a guide RNA to steer the Cas enzyme to the genome's gene editing target. After attaching to a sequence, Cas enzymes cleave DNA to insert, delete, or modify genes.…
NASA ADS
doi.org
Aug 1, 2024
Efficient DIPA-CRISPR-mediated knockout of an eye pigment gene in the white-backed planthopper, Sogatella furcifera
Although CRISPR/Cas9 has been widely used in insect gene editing, the need for the microinjection of preblastoderm embryos can preclude the technique being used in insect species with eggs that are small, have hard shells, and/or are difficult to collect and maintain outside of their normal environment. Such is the cas…
OpenAlex
doi.org
Apr 19, 2020
AAV-CRISPR Gene Editing Is Negated by Pre-existing Immunity to Cas9
Adeno-associated viral (AAV) vectors are a leading candidate for the delivery of CRISPR-Cas9 for therapeutic genome editing in vivo. However, AAV-based delivery involves persistent expression of the Cas9 nuclease, a bacterial protein. Recent studies indicate a high prevalence of neutralizing antibodies and T cells spec…
arXiv
arxiv.org
Nov 23, 2021
CRISPR SWAPnDROP -- A multifunctional system for genome editing and large-scale interspecies gene transfer
The need for diverse chromosomal modifications in biotechnology, synthetic biology and basic research requires the development of new technologies. With CRISPR SWAPnDROP, we extend the limits of genome editing to large-scale in-vivo DNA transfer between bacterial species. Its modular platform approach facilitates speci…
Europe PMC
doi.org
Mar 1, 2026
CRISPR gene editing of AtRING1 unravels a critical role of RAWUL domain in PRC1 repression of transcription.
DOAJ
sciencedirect.com
Sep 1, 2022
Precise detection of CRISPR-Cas9 editing in hair cells in the treatment of autosomal dominant hearing loss
Gene therapy would benefit from the effective editing of targeted cells with CRISPR-Cas9 tools. However, it is difficult to precisely assess the editing performance in vivo because the tissues contain many non-targeted cells, which is one of the major barriers to clinical translation. Here, in the Atoh1-GFP;Kcnq4+/G229…
CORE
core.ac.uk
Jan 1, 2019
A large CRISPR-induced bystander mutation causes immune dysregulation.
A persistent concern with CRISPR-Cas9 gene editing has been the potential to generate mutations at off-target genomic sites. While CRISPR-engineering mice to delete a ~360 bp intronic enhancer, here we discovered a founder line that had marked immune dysregulation caused by a 24 kb tandem duplication of the sequence ad…
OpenAIRE
doi.org
Oct 1, 2018
CRISPR Gene Editing Meets the Art World
NASA ADS
doi.org
Nov 1, 2023
Microparticle-mediated CRISPR DNA delivery for genome editing in poplar
The use of CRISPR/Cas9 is currently the method of choice for precise genome engineering in plants, including in the biomass crop poplar. The most commonly used method for delivering CRISPR/Cas9 and its components in poplar is via Agrobacterium-mediated transformation, that besides the desired gene-editing event also re…
OpenAlex
doi.org
Jun 26, 2021
CRISPR-Cas9 In Vivo Gene Editing for Transthyretin Amyloidosis
In a small group of patients with hereditary ATTR amyloidosis with polyneuropathy, administration of NTLA-2001 was associated with only mild adverse events and led to decreases in serum TTR protein concentrations through targeted knockout of TTR. (Funded by Intellia Therapeutics and Regeneron Pharmaceuticals; ClinicalT…
arXiv
arxiv.org
May 11, 2023
Comparative Analysis of Machine Learning Algorithms for Predicting On-Target and Off-Target Effects of CRISPR-Cas13d for gene editing
CRISPR-Cas13 is a system that utilizes single stranded RNAs for RNA editing. Prediction of on-target and off-target effects for the CRISPR-Cas13d dependency enables us to design specific single guide RNAs (sgRNAs) that help locate the desired RNA target positions. In this study, we compared the performance of multiple …
Europe PMC
doi.org
Jan 15, 2026
nf-core/crisprseq: a versatile pipeline for comprehensive analysis of CRISPR gene editing and screening assays.
DOAJ
sciencedirect.com
Aug 1, 2022
Humanized substitutions of Vmat1 in mice alter amygdala-dependent behaviors associated with the evolution of anxiety
Summary: The human vesicular monoamine transporter 1 (VMAT1) harbors unique substitutions (Asn136Thr/Ile) that affect monoamine uptake into synaptic vesicles. These substitutions are absent in all known mammals, suggesting their contributions to distinct aspects of human behavior modulated by monoaminergic transmission…
CORE
core.ac.uk
May 1, 2020
CAS9 is a genome mutator by directly disrupting DNA-PK dependent DNA repair pathway.
With its high efficiency for site-specific genome editing and easy manipulation, the clustered regularly interspaced short palindromic repeats (CRISPR)/ CRISPR associated protein 9 (CAS9) system has become the most widely used gene editing technology in biomedical research. In addition, significant progress has been ma…
OpenAIRE
doi.org
May 10, 2021
Comparative Study between the CRISPR/Cpf1 (Cas12a) and CRISPR/Cas9 Systems for Multiplex Gene Editing in Maize
Although the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9) system has been proved to be an efficient multiplex gene editing system in maize, it was still unclear how CRISPR/Cpf1 (Cas12a) system would perform for multiplex gene editing in maize. To this end, this s…
NASA ADS
doi.org
Sep 1, 2020
Regulatory barriers to improving global food security
Crop agriculture and food production constantly face climactic challenges to the supply of safe, nutritious food. These challenges highlight the importance of innovation resulting in improved crop technologies, capable of providing consistently increasing yields in the face of abiotic and biotic stresses. This article …
OpenAlex
doi.org
Apr 17, 2015
CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes
Genome editing tools such as the clustered regularly interspaced short palindromic repeat (CRISPR)-associated system (Cas) have been widely used to modify genes in model systems including animal zygotes and human cells, and hold tremendous promise for both basic research and clinical applications. To date, a serious kn…
arXiv
arxiv.org
Feb 18, 2025
Fast Antibiotic resistance-Based gene editing of mammalian cells with CRISPR-Cas9 (FAB-CRISPR)
Protein tagging with CRISPR-Cas9 enables the investigation of protein function in its native environment but is limited by low homology-directed repair (HDR) efficiency causing low knock-in rates. We present a detailed pipeline using HDR donor plasmids containing antibiotic resistance cassettes for rapid selection of g…
Europe PMC
doi.org
Oct 1, 2025
LeDNA: a cut-and-build toolkit to democratize CRISPR gene editing technology education.
DOAJ
life-science-alliance.org
Mar 1, 2025
Genetic modulation of RNA splicing rescues BRCA2 function in mutant cells
This study provides proof of principle for the therapeutic potential of splicing modulation as a strategy to rescue BRCA2 function in mutant cells. Variants in the hereditary cancer-associated BRCA1 and BRCA2 genes can alter RNA splicing, producing transcripts that encode internally truncated yet potentially functional…
CORE
core.ac.uk
Jan 1, 2015
Developing a Gene Editing System to Study Haplodiploidy in the Jewel Wasp, Nasonia Vitripennis
Hymenopteran insects, which include all ants, bees and wasps, reproduce through a poorly understood form of reproduction known as haplodiploidy. A promising experimental system for understanding this developmental process is the jewel wasp, Nasonia vitripennis. A critical aspect of using Nasonia as a model is establish…
OpenAIRE
doi.org
Dec 1, 2023
CRISPR-based gene editing technology and its application in microbial engineering
Gene editing technology involves the modification of a specific target gene to obtain a new function or phenotype. Recent advances in clustered regularly interspaced short palindromic repeats (CRISPR)-Cas-mediated technologies have provided an efficient tool for genetic engineering of cells and organisms. Here, we revi…
NASA ADS
doi.org
Oct 1, 2020
The Uproar Over Gene-Edited Babies: A Semantic Network Analysis of CRISPR on Twitter
CRISPR-Cas9, a recent gene editing technology, has potential to greatly impact medicine, agriculture, and the environment; therefore, it is increasingly important to understand the public's perceptions surrounding this technology. This study examined the main themes of CRISPR during a nine-month period on Twitter throu…
OpenAlex
doi.org
Dec 5, 2020
CRISPR-Cas9 Gene Editing for Sickle Cell Disease and β-Thalassemia
Transfusion-dependent β-thalassemia (TDT) and sickle cell disease (SCD) are severe monogenic diseases with severe and potentially life-threatening manifestations. BCL11A is a transcription factor that represses γ-globin expression and fetal hemoglobin in erythroid cells. We performed electroporation of CD34+ hematopoie…
arXiv
arxiv.org
Sep 1, 2024
Gene and RNA Editing: Methods, Enabling Technologies, Applications, and Future Directions
Gene and RNA editing methods, technologies, and applications are emerging as innovative forms of therapy and medicine, offering more efficient implementation compared to traditional pharmaceutical treatments. Current trends emphasize the urgent need for advanced methods and technologies to detect public health threats,…
Europe PMC
doi.org
May 28, 2025
Lipid Nanoparticles for Delivery of CRISPR Gene Editing Components.
DOAJ
mdpi.com
Jun 1, 2023
Genome Editing for Cystic Fibrosis
Cystic fibrosis (CF) is a monogenic recessive genetic disorder caused by mutations in the CF Transmembrane-conductance Regulator gene (CFTR). Remarkable progress in basic research has led to the discovery of highly effective CFTR modulators. Now ~90% of CF patients are treatable. However, these modulator therapies are …
CORE
core.ac.uk
Sep 1, 2019
CRISPR-Cas9-Mediated Genome Editing Increases Lifespan and Improves Motor Deficits in a Huntington's Disease Mouse Model.
Huntington's disease (HD) is a currently incurable and, ultimately, fatal neurodegenerative disorder caused by a CAG trinucleotide repeat expansion within exon 1 of the huntingtin (HTT) gene, which results in the production of a mutant protein that forms inclusions and selectively destroys neurons in the striatum and o…
OpenAIRE
doi.org
Jun 15, 2024
CRISPR-based gene editing in plants: Focus on reagents and their delivery tools
Introduction: CRISPR-Cas9 technology has revolutionized plant genome editing, providing precise and efficient methods for genetic modification. This study focuses on the advancements and delivery of CRISPR-Cas9 in plant gene editing. Methods: A comprehensive search in scientific databases, including PubMed, ScienceDire…
NASA ADS
doi.org
Mar 1, 2016
CRISPR: gene editing is just the beginning
The real power of the biological tool lies in exploring how genomes work.
OpenAlex
doi.org
Nov 23, 2015
Resources for the design of CRISPR gene editing experiments
CRISPR-based approaches have quickly become a favored method to perturb genes to uncover their functions. Here, we review the key considerations in the design of genome editing experiments, and survey the tools and resources currently available to assist users of this technology.
arXiv
arxiv.org
May 8, 2023
Prokaryotic genome editing based on the subtype I-B-Svi CRISPR-Cas system
Type I CRISPR-Cas systems are the most common among six types of CRISPR-Cas systems, however, non-self-targeting genome editing based on a single Cas3 of type I CRISPR-Cas systems has not been reported. Here, we present the subtype I-B-Svi CRISPR-Cas system (with three confirmed CRISPRs and a cas gene cluster) and geno…
Europe PMC
doi.org
Aug 5, 2025
Next-generation CRISPR gene editing tools in the precision treatment of Alzheimer's and Parkinson's disease.
DOAJ
doi.org
Sep 1, 2023
Progress and Perspective of CRISPR‐Cas9 Technology in Translational Medicine
Abstract Translational medicine aims to improve human health by exploring potential treatment methods developed during basic scientific research and applying them to the treatment of patients in clinical settings. The advanced perceptions of gene functions have remarkably revolutionized clinical treatment strategies fo…
CORE
core.ac.uk
May 14, 2019
INHIBITIONS OF HEPATITIS C VIRUS REPLICATION WITH THE HELP OF CRISPR/CAS 9 TECHNOLOGY
Hepatitis c infection caused by Hepatitis c virus (HBV) is a major world-wide health problem. Current therapeutic strategies rarely eradicate HBV infections and fail to attain complete cure. There is urgent need to develop advanced
treatment strategies to successfully remove HBV infection and eliminate hidden reservoi…
OpenAIRE
doi.org
Apr 28, 2023
CRISPR Gene Editing of Virulent Bacteriophage ICP1
Tools for site-directed mutagenesis of virulent bacteriophages (phages; viruses of bacteria) have traditionally lagged those for bacteria, hindering their study. CRISPR gene editing represents a new and highly efficient method for editing virulent phage genomes. Here, I describe methods for using CRISPR gene editing fo…
NASA ADS
doi.org
Jun 1, 2024
Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement
Aquaculture is one of the fastest-growing food production sectors. As the global human population continues to increase and further pressure is added to the prospects of achieving global food security, aquaculture is expected to play an integral role in meeting future nutrition demands. With advances in genetic technol…
OpenAlex
doi.org
Dec 5, 2016
Multiplex gene editing by CRISPR–Cpf1 using a single crRNA array
arXiv
arxiv.org
Sep 30, 2024
FreeMask: Rethinking the Importance of Attention Masks for Zero-Shot Video Editing
Text-to-video diffusion models have made remarkable advancements. Driven by their ability to generate temporally coherent videos, research on zero-shot video editing using these fundamental models has expanded rapidly. To enhance editing quality, structural controls are frequently employed in video editing. Among these…
Europe PMC
doi.org
Apr 24, 2025
Transforming Pharmacogenomics and CRISPR Gene Editing with the Power of Artificial Intelligence for Precision Medicine.
DOAJ
journal.frontiersin.org
Mar 1, 2018
Bacterial and Pneumocystis Infections in the Lungs of Gene-Knockout Rabbits with Severe Combined Immunodeficiency
Using the CRISPR/Cas9 gene-editing technology, we recently produced a number of rabbits with mutations in immune function genes, including FOXN1, PRKDC, RAG1, RAG2, and IL2RG. Seven founder knockout rabbits (F0) and three male IL2RG null (−/y) F1 animals demonstrated severe combined immunodeficiency (SCID), characteriz…
CORE
core.ac.uk
Jan 1, 2017
CRISPR/Cas9–mediated deletion of CTG expansions recovers normal phenotype in myogenic cells derived from myotonic dystrophy 1 patients
Myotonic dystrophy type 1 (DM1) is the most common adult-onset muscular dystrophy, characterized by progressive myopathy, myotonia, and multi-organ involvement. This dystrophy is an inherited autosomal dominant disease caused by a (CTG)n expansion within the 30 untranslated region of the DMPK gene. Expression of the mu…
OpenAIRE
doi.org
Sep 3, 2022
CRISPR-Analytics (CRISPR-A): A platform for precise analytics and simulations for gene editing
Gene editing characterization with currently available tools does not always give precise relative proportions among the different types of gene edits present in an edited bulk of cells. We have developed CRISPR-Analytics, CRISPR-A, which is a comprehensive and versatile genome editing web application tool and a nextfl…
NASA ADS
doi.org
Aug 1, 2023
Pho1a (plastid starch phosphorylase) is duplicated and essential for normal starch granule phenotype in tubers of Solanum tuberosum L
Reserve starch from seeds and tubers is a crucial plant product for human survival. Much research has been devoted to quantitative and qualitative aspects of starch synthesis and its relation to abiotic factors of importance in agriculture. Certain aspects of genetic factors and enzymes influencing carbon assimilation …
OpenAlex
doi.org
Apr 6, 2015
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
arXiv
arxiv.org
Sep 9, 2024
DeepFM-Crispr: Prediction of CRISPR On-Target Effects via Deep Learning
Since the advent of CRISPR-Cas9, a groundbreaking gene-editing technology that enables precise genomic modifications via a short RNA guide sequence, there has been a marked increase in the accessibility and application of this technology across various fields. The success of CRISPR-Cas9 has spurred further investment a…
Europe PMC
doi.org
Feb 14, 2025
Vectors in CRISPR Gene Editing for Neurological Disorders: Challenges and Opportunities.
DOAJ
frontiersin.org
May 1, 2021
CRISPR-Cas9 Editing of Human Histone Deubiquitinase Gene USP16 in Human Monocytic Leukemia Cell Line THP-1
USP16 is a histone deubiquitinase which facilitates G2/M transition during the cell cycle, regulates DNA damage repair and contributes to inducible gene expression. We mutated the USP16 gene in a high differentiation clone of the acute monocytic leukemia cell line THP-1 using the CRISPR-Cas9 system and generated four h…
CORE
core.ac.uk
Jan 1, 2020
Targeted mutagenesis using CRISPR-Cas9 in the chelicerate herbivore Tetranychus urticae
The use of CRISPR-Cas9 has revolutionized functional genetic work in many organisms, including more and more insect species. However, successful gene editing or genetic transformation has not yet been reported for chelicerates, the second largest group of terrestrial animals. Within this group, some mite and tick speci…
OpenAIRE
pubmed.ncbi.nlm.nih.gov
Aug 17, 2023
[Precision gene editing technologies based on CRISPR/Cas9: a review].
Gene editing technology is a genetic operation technology that can modify the DNA sequence at the genomic level. The precision gene editing technology based on CRISPR/Cas9 system is a gene editing technology that is easy to operate and widely used. Unlike the traditional CRISPR/Cas9 system, the precision gene editing t…
NASA ADS
doi.org
Nov 1, 2024
Perceptions of plant breeding methods─from 'phenotypic selection' to 'genetic modification' and 'new breeding technologies'
Plant breeding has been closely aligned with the development of civilisations and continues to be important for the supply of nutritious food and a key factor in reducing poverty and hunger. Plant breeding uses a range of techniques for both expanding and exploiting the genetic potential of plants. However, some techni…